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Stacked Chicken Enchilada Bake

Chicken thighs simmered in a toasted chile sauce, then layered with corn tortillas and sharp cheddar and baked until the top browns and the edges bubble.

By Camille McLaughlin, RDN, LD, registered dietitian nutritionist

Built forLow-FODMAPDinner
Also fits High-Fiber High-Protein Low-Added-Sugar
Chili powder, cumin, and smoked paprika toast in hot oil until the kitchen smells like a taqueria, and chicken thighs simmer down into that red sauce. Corn tortillas soften between the layers, cheddar browns and bubbles at the edges of the dish, and lime, cilantro, and raw jalapeno go over each square.
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Why You'll Love This Recipe

This is what I make when there are other people at the table and only one of us is being careful about food. Nobody has ever asked what is different about it, which is the entire point of the recipe. It is a weeknight dish that runs about an hour and a half from cutting board to plates, and most of that is the chicken quietly simmering while you set the table and the oven does the rest. It comes out with a browned cheddar top and dark bubbling edges, and you cut it into squares the way you would cut lasagna. Put cilantro, lime wedges, and sliced jalapeno on the table and let everyone finish their own square.

There is no onion and no garlic in the sauce, and you will not miss them, because the savoriness is built somewhere else. The chili powder, cumin, smoked paprika, and chipotle go into hot garlic-infused olive oil for about forty-five seconds, until they darken a shade and smell nutty, then the tomato paste fries against the hot pot until it turns from red to brick. Garlic-infused oil is worth understanding rather than just using: the flavor compounds in garlic dissolve into fat, and the parts that trouble a sensitive gut do not, so the oil carries the taste and leaves the rest in the pan. Between toasted spice, fried paste, and hard-browned thighs, this sauce tastes like it cooked all day.

Stacking rather than rolling is the other decision worth defending. Rolled enchiladas want every tortilla warm and pliable and two patient hands, while a stack takes four minutes and eats exactly the same once it is cut. The tortillas in the middle turn soft and almost custardy where they sit in the sauce, the ones around the rim stay a little chewy, and the cheddar browns in patches rather than evenly. Give the pan ten minutes on the counter before you cut it or the layers slide off the spatula. Cold squares the next day, crisped in a dry skillet until the bottom tortilla goes brittle, are arguably better than the first night.

A square baking dish of layered corn tortillas and shredded chicken in red sauce with a browned cheddar top, one corner square lifted out to show the layers. Save
Prep: 25 minsCook: 60 minsTotal: 85 minsMakes: 4 servingsServing: 1 large square

Ingredients

Serves4Amounts change with the number. The nutrition panel is per serving, so it stays the same.
  • 1 1/2 lb boneless, skinless chicken thighs
  • 12 corn tortillas (6-inch)
  • 6 oz sharp cheddar, grated (about 1 1/2 cups)
  • 1 can (14.5 oz) crushed tomatoes
  • 2 tbsp tomato paste
  • 1 1/2 cups low-sodium chicken broth
  • 3 tbsp garlic-infused olive oil, divided
  • 2 tbsp chili powder
  • 1 tbsp ground cumin
  • 2 tsp smoked paprika
  • 1 tsp dried oregano
  • 1/2 tsp chipotle powder
  • 2 tbsp fresh lime juice, plus wedges to serve
  • 1/3 cup chopped fresh cilantro
  • 1 jalapeno, thinly sliced, to serve
  • 1 1/2 tsp fine sea salt, divided

Instructions

  1. Brown the chicken: Pat the thighs dry and season them with 1/2 teaspoon of the salt. Heat 1 tablespoon of the garlic-infused olive oil in a heavy pot over medium-high and brown the thighs in a single layer, about 4 minutes a side, until the surface is deeply colored. Lift them onto a plate. They will not be cooked through yet.
  2. Toast the spices and fry the paste: Lower the heat to medium and add the remaining 2 tablespoons of oil, the chili powder, cumin, smoked paprika, oregano, and chipotle powder. Stir constantly for about 45 seconds, until the spices darken and smell nutty rather than dusty. Add the tomato paste and cook 2 minutes more, pressing it against the bottom until it turns brick red.
  3. Simmer and shred: Pour in the crushed tomatoes and the broth, scrape the bottom of the pot clean, and add 3/4 teaspoon of the salt. Return the thighs and any juices, bring it to a simmer, cover, and cook 25 minutes, until the meat pulls apart under a fork. Lift the chicken out, shred it with two forks, taste the sauce and add the last 1/4 teaspoon of salt if it needs it, then stir the chicken back into about two thirds of the sauce.
  4. Build the stack: Heat the oven to 375°F (190°C). Spread a thin layer of the reserved plain sauce in a 9-inch square baking dish. Lay down 4 tortillas, overlapping and torn to fit, then half the chicken and a third of the cheddar. Repeat, then finish with the last 4 tortillas, the remaining plain sauce spread to the corners, and the rest of the cheddar.
  5. Bake it: Cover the dish with foil and bake 20 minutes, then pull the foil off and bake 15 to 20 minutes more, until the cheddar is browned in patches and the sauce is bubbling up the sides. If the top is still pale at that point, run it under the broiler for 90 seconds and watch it the whole time.
  6. Rest and finish: Let the dish sit on the counter for 10 minutes so the layers set, then cut it into four squares. Stir the lime juice into any warm sauce left in the pot and spoon it over, then scatter the cilantro and sliced jalapeno across the top and serve with lime wedges.
Nutrition Facts
4 servings per recipe
Serving size1 large square
Calories757
% Daily Value*
Total Fat 42g54%
Saturated Fat 15g73%
Trans Fat 0g
Cholesterol 213mg71%
Sodium 1556mg68%
Total Carbohydrate 47g17%
Dietary Fiber 9g33%
Total Sugars 8g
Includes 0g Added Sugars 0%
Protein 51g
Vitamin D 0.4mcg2%
Calcium 454mg35%
Iron 6.6mg37%
Potassium 1056mg22%
* Percent Daily Values are based on a 2,000 calorie diet. Values are computed from USDA FoodData Central and are estimates. Per serving (1 large square).

Variations

  • Green version: Skip the crushed tomatoes, simmer the chicken in broth with two diced poblanos, and finish with a large handful of cilantro.
  • Ground beef: Brown a pound and a half of ground beef in place of the thighs and skip straight to the simmer, which cuts about 20 minutes.
  • More vegetables: Wilt a few big handfuls of spinach into the shredded chicken before it goes into the layers.
  • Smokier and hotter: Take the chipotle powder to a full teaspoon and add a diced jalapeno to the sauce rather than saving it for the top.
  • Cheese swap: Use mozzarella for a milder, stretchier top, or scatter crumbled feta over the finished pan for something sharper.

Storage & Leftovers

Covered tightly, the baked dish keeps in the refrigerator for up to 4 days and slices more cleanly cold than hot. Let it cool uncovered for half an hour before the foil goes on, since trapping steam over a hot pan is what turns the top layer of tortillas soft and pasty overnight.

Reheat squares in a 350°F (175°C) oven for 15 minutes, covered for the first 10, or crisp a cold square in a dry skillet over medium for 4 minutes until the bottom tortilla goes brittle. The microwave works in a hurry, but it steams the tortillas and you lose the browned top entirely.

It freezes well either baked or assembled raw. Wrap the dish in foil, freeze up to 3 months, and bake from frozen at 375°F (190°C) for about an hour, covered, plus 15 minutes uncovered. Add the cilantro, lime, and jalapeno after it comes out, since all three go dull in the freezer.

Notes & Tips

A few notes from my kitchen, mostly about toasted spice, thin layers, and letting a hot pan sit still for ten minutes.
  • Use the garlic-infused oil: Garlic flavor is fat-soluble and the part that upsets a sensitive gut is not, so the oil tastes garlicky and behaves gently, which is why it does the heavy lifting in this pan.
  • Read the chili powder label: Most supermarket chili powder blends include onion and garlic powder, so buy a pure ground chile or a blend whose label lists only chiles, cumin, and oregano.
  • Toast the spices in fat: Forty-five seconds in hot oil is the difference between a sauce that tastes cooked and one that tastes chalky, and it is where the color comes from too.
  • Keep the sauce layers thin: Corn tortillas soak up more than you expect. Spread the sauce with the back of a spoon rather than ladling it, or the middle turns to paste.
  • Rest before you cut: Ten minutes on the counter lets the cheese set enough to hold the layers, and the difference between a square and a landslide is entirely that wait.
  • Set the table up for everyone else: Put out sour cream, chopped raw onion, and avocado for the rest of the household to add to their own squares, and keep the onion bowl at their end of the table rather than in the pan.

Nutrition & Mindful Eating

Layers of soft corn tortilla, shredded chicken, and a red sauce built on spices toasted in hot oil, under a lid of browned cheddar.
  • The thighs, the tortillas, and the cheddar each do a different job here. The chicken carries the protein and the substance, the corn tortillas give the pan its soft body, and the cheese browning on top is what makes it eat like a proper baked dinner.
  • Chicken thigh is dark, fine-grained meat that stays juicy through a long simmer, and it brings more iron and zinc than the paler cut does, which is part of why a square of this holds you well into the evening.
  • Corn tortillas layered into a hot sauce turn soft and almost custardy in the middle of the pan while the edges stay chewy, and they bring a little whole-grain fiber along with that texture.
  • Cooked tomato is doing double duty as both sauce and seasoning here, and slow heat with oil behind it is what draws out the lycopene that gives the pan its deep red color.
  • Chili powder, cumin, smoked paprika, and chipotle go into hot oil rather than into the liquid, which is what makes them taste round and toasted, and the lime squeezed over at the end keeps something this rich tasting bright.
  • As you eat, notice how the tortillas in the middle have gone soft while the corner ones stayed chewy, and let the lime and the cilantro slow you down enough to finish the square sitting at the table.

Frequently Asked Questions

Can I use chicken breast?

You can, at the same weight, but shorten the simmer to about 15 minutes and check it early. Breast meat shreds fine and then dries out fast, so pull it the moment it gives way. Thighs are more forgiving here because they sit in sauce twice, once on the stove and once in the oven.

My tortillas fell apart into mush.

That is usually too much sauce or too long in the oven. Corn tortillas can absorb only so much before they lose structure, so keep the sauce layers thin, spread rather than poured, and take the pan out once the edges bubble, without waiting for the middle to catch up.

Can I put it together ahead of time?

Yes, and it is better for it. Assemble the whole dish up to a day ahead, keep it covered in the refrigerator, and add 10 minutes to the covered bake time. The sauce works into the tortillas overnight and the layers hold together beautifully when you cut them.

Does this fit a low-FODMAP dinner plan?

It does. The depth comes from browning the thighs, toasting the spices in oil, and frying the tomato paste, so nothing here is leaning on onion or garlic. Read your chili powder label, since many blends carry onion and garlic powder, and cook with garlic-infused olive oil for that note.